6B). On the contrary, IKKε-Δ647 exerted Selleckchem Doxorubicin a prominent dominant-negative effect on NF-κB induction mediated by overexpression of IKKε-wt when expressed in equal amounts, but not when IKKε-wt

was expressed at a five or tenfold excess (Fig. 6C). When quantifying IFN-β in the supernatants of these cells, we observed that the release of IFN-β induced by overexpression of IKKε-wt was reduced when any of the isoforms was cotransfected (Fig. 5B). Infection with VSV activates the TBK1/IKKε complex and, thereby, type I IFN release. On the other side, VSV replication is very efficiently blocked by type I IFN 1. Therefore, we measured virus spread as an indicator for IFN release. HEK293T cells transiently transfected with IKKε-wt, the different variants, or various combinations thereof were infected with VSV-GFP. GFP-positive cells were harvested 12.5 h after infection, fixed, and quantified by flow cytometry. As shown in Fig. 7, overexpression of IKKε-wt decreased infection rates of HEK293T cells in comparison to vector-transfected cells, and this inhibition was abrogated when IKKε-sv1 or IKKε-Δ647 were coexpressed. IKKε forms homodimers to exert some of its biological functions independently of TBK1 10. To investigate whether the IKKε splice variants interact with IKKε-wt to produce dysfunctional heterodimers explaining the observed dominant-negative effects, we coexpressed untagged

IKKε-wt with FLAG-tagged IKKε splice variants in HEK293T cells and performed IP with the anti-FLAG mAb. Coprecipitating IKKε-wt was visualized using an anti-IKKε mAb, recognizing the C-terminus of the protein. As shown in Fig. 8, IKKε-wt coprecipitated GPCR Compound Library cost with all FLAG-tagged splice variants. FLAG-IKKε-sv1 partially contains the epitope recognized by the anti-IKKε mAb and is therefore detected in the anti-IKKε blot of the FLAG-IP as well (Fig. 8). Thus, heterodimer formation with IKKε-wt could explain the observed dominant-negative effects of the splice variants. Activation of IRF3-dependent type I IFN

expression by IKKε requires dimerization Nutlin 3 with TBK1 and interaction with at least one of the scaffold proteins NAP1, TANK, and SINTBAD 7–9. To investigate the molecular mechanism causing the lack of IRF3 activation by the truncated IKKε isoforms, we performed co-IP experiments using lysates from transiently transfected HEK293T cells. First, interaction of the FLAG-tagged IKKε isoforms with TBK1 was investigated. As shown in Fig. 9A, IP of TBK1 indicated that IKKε-wt only interacts with TBK1. However, precipitating the IKKε proteins with the anti-FLAG Ab revealed coprecipitation of TBK1 with all isoforms although at a lower intensity with IKKε-Δ647 (Fig. 9A). From these data, we concluded that the lack of IRF3 activation by truncated IKKε is not due to its inability to bind to TBK1. Next, we tested the scaffold proteins NAP1, TANK, and SINTBAD for coprecipitation with the FLAG-tagged IKKε isoforms.