Purse-seine fisheries are also global in nature, operating in coastal and open waters for aggregated pelagic species, particularly tuna
and sardines (FAO, 2008). In Chagos/BIOT, the purse-seine fishery targeted mainly yellowfin and skipjack tuna (Katsuwonus pelamis) and was highly seasonal, operating between November and March with a peak usually in December and January ( Mees et al., 2009a). Catches, mainly by Spanish and French flagged vessels, were highly variable from logbook records, ranging from < 100 to ∼24,000 tonnes VX-765 cell line annually over the last five years ( Table 3 and Table 4). Total catch in the Indian Ocean for bigeye tuna are considered close to the maximum sustainable yield and in recent years, yellowfin tuna has also been overexploited with catches exceeding maximum sustainable yield (IOTC, 2010). Concerns regarding the level of catch of juveniles for both species have been highlighted (IOTC, 2010). Skipjack tuna is a see more highly productive and resilient species, however, recent indicators suggest the Indian Ocean stocks should be
closely monitored (IOTC, 2010). Data from tuna fisheries indicate biases and additional information sources are necessary to fully evaluate the status of the stocks (Ahrens, 2010). Illegal, unreported and unregulated fishing is not a trivial component of the catch and adds substantial uncertainty into assessments (Ahrens, 2010). There is an increasing appreciation of the effects of uncertainty on fishery stock assessment and management, resulting in a more explicit focus on sustainability and its quantification (Ahrens, 2010 and Botsford et al., 2009). As with all commercial pelagic fisheries, bycatch and discards are the greatest potential threat to non-target species. These threats are evaluated in more detail later in this paper. Two smaller fisheries have also been operating in Chagos/BIOT. In 2008, a small recreational fishery on Diego Garcia caught 25.2 tonnes of tuna and tuna-like
species (76% of the catch); the remainder were reef-associated species (Mees et al., 2009b). Secondly, a Mauritian inshore fishery that targeted demersal species, principally snappers, emperors Thalidomide and groupers, whose logbook records indicated that the catches were between 200 and 300 tonnes per year for the period 1991–1997, decreasing to between 100 and 150 tonnes from 2004 (Mees, 2008). The long distance from ports and relatively short season made this an increasingly unattractive venture and the number of licences issued declined in recent years (Mees, 2008). Overall total catches in the inshore fishery were considered within sustainable limits, although varied considerably between atolls and banks (Mees, 2008). Despite the limited effort, such levels of exploitation were of potential concern considering the fishery targeted predatory species at the higher trophic levels e.g. groupers and the individuals retained were often at the maximum recorded total length for that species (S.