Discussion Due to the YM155 supplier anticipated importance of membrane- and membrane-associated EVP4593 proteins of M. tuberculosis in bacterial virulence, it is essential to map these proteins. Therefore, the aim of this study was to characterize the repertoire of membrane and membrane associated proteins from the two widely used M. tuberculosis strains H37Rv (virulent) and H37Ra (avirulent). As the M. tuberculosis H37Ra genome has recently been sequenced, there is currently great interest

in investigating the differences between the two strains in more detail [34–36]. The protein profile data of the two strains were further analysed with the aim of finding relative quantitative differences of the observed proteins. Using proteomic data to quantify proteins gives a more realistic impression about the protein content and hence the physiological state of the bacilli, rather than mRNA measurement, as mRNA levels do not necessarily reflect the amount of proteins expressed. High-throughput proteomics using state-of-art instruments is well suited for providing more detailed information of the differences in expressed proteins between the two strains, complementing and adding to prior studies that have mainly focussed on gene expression by mRNA measurements [10, 36]. We observed that the vast majority of the proteins were present in both strains

and had similar relative abundance (Figure 2). This was expected as the two strains are closely related. However, a small group of proteins had a different relative abundance in the two strains. Among the differently abundant proteins, a member selleck of the general secretory (Sec) pathway (Rv2586c, SecF) was identified with over 6 fold higher relative abundance in M. tuberculosis PtdIns(3,4)P2 H37Rv compared to M. tuberculosis H37Ra (Table 1). In bacteria, the bulk of protein export across the cytoplasmic membrane is carried out by this pathway [37–39]. The final destination of Sec exported proteins can be the cell envelope or the extracellular space. The

Sec pathway is well-characterized in Escherichia coli [37, 38, 40]. At the core of the Sec pathway is a membrane-spanning translocation channel composed of the integral membrane proteins: Rv0638 (SecE1), Rv0379 (SecE2), Rv2586c (SecF), Rv1440 (SecG), Rv0732 (SecY) [41]. SecA binds to cytoplasmic precursor proteins destined for export and delivers them to the translocation machinery through its ability to bind to membrane phospholipids [42]. The three subunits with predicted transmembrane regions that comprise the core of the Sec translocation and export machinery are all identified in both strains. The two other components, Rv0732 (SecY) and Rv2587c (SecD), also have higher relative abundance in M. tuberculosis H37Rv. Since we restricted the analysis only to the ones with 5 fold difference or more, these were not included in the Table 1. Nevertheless, our data indicates a trend of higher expression of these subunits.