The NdeI-EcoRI fragment of this two new plasmids were inserted into the NdeI and EcoRI sites of pET28b to give pHW74 and pHW76. To increase FabZ expression, 24 codons that correspond to rare E. coli tRNA species were substituted with codons favored in E. coli by site-directed mutagenesis

using the primers listed in Additional file 1 to give pHW74m. The NcoI-HindIII fragment of pHW74m was inserted into the NcoI and HindIII sites of pBAD24 to give pHW22m. Construction of an E. coli fabZ Deletion Strain A linear DNA fragments carrying a kan cassette was amplified from pKD13 by PCR [9, 31] using primers, HZ1 and HZ2 listed RG7112 clinical trial in Additional file 1. These primers were homologous at the 3′ end for priming sequences in pKD13 and contained 45-nucleotide extensions at the 5′ end homologous to the E. coli fabZ sequence. The 1.4 kb PCR product was purified, treated with DpnI, selleck inhibitor and then introduced into a pHW22-containing derivative of DY330 a strain lysogenic for a defective prophage that contains the recombination genes under control of temperature-sensitive cI-repressor [9]. The transformed cells were spread on LB plates containing ampicillin, kanamycin and arabinose. The E. coli

fabZ deletion strain, HW7, was verified by PCR using primers P1, P2 plus HZ1, and HZ2. Analysis of phospholipid fatty acid compositions Cultures (5 ml) were grown aerobically at different temperatures in RB medium overnight. The cells were then harvested and the phospholipids extracted as described previously [14]. The fatty acid compositions were

analyzed by mass spectroscopy as described previously [9, 14]. For analysis of radioactive fatty acids, 100 μl of a culture grown overnight in LB medium was Aspartate transferred into 5 ml of RB medium supplemented with 0.1% cis-9, 10-methylenehexadecanoic acid (a cyclopropane fatty acid) plus 0.01% L-arabinose. After incubation of these cultures for 1 h, 5 μCi of sodium [1-14C] acetate was added and the culture allowed continuing growth for 4 h. The phospholipids were then extracted as described above. The phospholipid acyl chains were converted to their methyl esters, which were separated by argentation thin-layer chromatography, and analyzed with autoradiography [12] Expression of plasmid-encoded proteins To assay expression of the products of C. acetobutylicium fabF1 and fabZ, pHW28 and pHW39 were introduced into E. coli strain BL21 (DE3), which encodes T7 RNA polymerase under the control of the IPTG-inducible lacUV5 promoter. The products of the cloned gene were selectively this website labeled with [35S]methionine as described [32]. The proteins were separated on a sodium dodecyl sulfate-12% polyacrylamide gel (pH 8.8). The destained gels were dried, and the labeled proteins were visualized by autoradiography [32].